Add having his family turn on him to the list; in Cable and Deadpool, Professor X sends Cyborg and a team of X-Men out to kill him when they think he’s gone rogue. The same thing happens in the post-House of M story that introduces baby Hope and one of the X-Force runs from the 2010s. In all of those cases he turns out to be in the right or have a good reason for his actions even if it’s not immediately apparent, but it only becomes apparent to the rest of the characters after they’ve already tried to kill him.
Re: character tropes you can't stand